NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081540_1000148

Scaffold Ga0081540_1000148


Overview

Basic Information
Taxon OID3300005983 Open in IMG/M
Scaffold IDGa0081540_1000148 Open in IMG/M
Source Dataset NameTabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)72453
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (67.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location NameUniversity of Puerto Rico, San Juan, Puerto Rico
CoordinatesLat. (o)18.402889Long. (o)-66.050054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002340Metagenome / Metatranscriptome569Y
F010103Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0081540_100014829F010103GGAVKQKHEGELARVLNVAPPQAYERGAEGKRSWWRRAITLFGTFQRKHGGALTREDLAEYRKQKAREELPVTDPERHLGLRVSRLDDFAKGLVVDGDVEFNDLGGNFERKEDDDHRALNTGYSIYPQSEARNHERPNHLRLFQEGCEPRSFRDRFEDAEHIARVRAMEKRNRRATQEFLGRWNEAEKEARASHSNQSGSSEQTFFGKSGKIRPPKRNRQ*
Ga0081540_100014852F002340GGAGMKTILSALVALSVIAGVAGSASAFDAKSFYEQIDRNHN*
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