NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075470_10000281

Scaffold Ga0075470_10000281


Overview

Basic Information
Taxon OID3300006030 Open in IMG/M
Scaffold IDGa0075470_10000281 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17032
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (75.00%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Associated Families17

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F000868Metagenome / Metatranscriptome853Y
F001019Metagenome / Metatranscriptome804Y
F002071Metagenome / Metatranscriptome596Y
F002489Metagenome / Metatranscriptome554Y
F004666Metagenome / Metatranscriptome428Y
F005177Metagenome / Metatranscriptome409Y
F005745Metagenome / Metatranscriptome391Y
F007363Metagenome / Metatranscriptome352Y
F007470Metagenome / Metatranscriptome350Y
F017484Metagenome / Metatranscriptome240Y
F021111Metagenome / Metatranscriptome220Y
F024549Metagenome / Metatranscriptome205Y
F026195Metagenome / Metatranscriptome198Y
F078406Metagenome / Metatranscriptome116N
F095357Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0075470_1000028110F005745AGGAMNITATELDPRLHKLVNLGVSGIDIMHGELKIKMLEAEAELQMAQEIEEENDYSDAMESMERKYWEGYTDALAALYSLTYDLSFAIADKEAKNGN*
Ga0075470_1000028112F000868GGAGMAESFLENENQMVIDAIYHEIGEQLVEDWVQSNLDEGQMYADYRFAEMSNDNYIKGRFNLFYDLNPEDQYYLEWDENV*
Ga0075470_1000028115F000450AGGAMGDRANFGFVQPNGNTIVLYGHWAGHQMLGRLADAVIAARPRWNDTAYATRIAISQLIKDDWNSETGWGLHVNEIADNEHKIAIVDFNQQTFSLHEEDSFSNTSNKVRGMKNEALFTMDLSTFCEKYALEGILVN*
Ga0075470_1000028117F007470AGGAGMDYQDGFEDGVKFAREVIINNIRLWAETSEDGQAYDDIADRLEFGTVDYDL*
Ga0075470_1000028118F000311GAGMYFELTAPDRLSLEMAYWEAQISGLDPEFMPPLTFNVGTGSIEKVSRIRDKFNLVESYTADAQPTGYIRR*
Ga0075470_100002812F026195N/AMGFLDNLEAWLDFEEDIDKDPEMGHSNPEIGYSTGKWSDEDDRHPVITPVFGPNR*
Ga0075470_1000028122F005177AGGAMKNRYRVEIFDEIKDNDLTLYSDEGVNKEYLTELVFSNLRRFSGNVRAYVFDNLKKKKTTALYLPMEVIPKKTELTKLLG*
Ga0075470_1000028123F024549N/AMLKYLSLLTERKQMYKLTVLYDGDVFATYQYSDALQAFEAFARCIDVGFAENEATYNLSMPTGKMYTKNFNRAGLVSAK*
Ga0075470_1000028125F002071AGGAMATTLEIGQTFTTEKSGVIGVIKAVDNHPSGVARVLLDVNGSERWTSVSI*
Ga0075470_1000028127F078406AGGAMLSTATALIEATEQSIFDEEVMGFAQAFCHNAKDLDTEQFAKSIYVYSCMLASLAVDKAMKVLLSEDEIIDLMNAIDELETMRDEVMNNGE*
Ga0075470_1000028138F007363GGAGMKGKLTMKSYSIVDLLVDTYYAPTSLRRRFNGGIINHAEKREDIYLPEGYEAFAIRYRPTGRFNDEWATVAVRVADY*
Ga0075470_1000028139F017484AGGAMGYLEIFEMNENGAGWVSLENASTSTKLDLELAMLTKAEVKMLCFVCHKEIAKGNVCVNHKNVRGAVYFE*
Ga0075470_100002814F095357AGGTGGMAQSKEIKVGELLANSVEDYWFNPATLGHYLSQQPNWTIDRVMEVVCWIIEKNAGVYKDKAGKQEISEGLALAYTLDNLINRIKEANNFNHIKLP*
Ga0075470_100002815F004666AGGAMTTKREYLASKGITVGRRGRFSSAAKQALQEAESQGIKFVAESKTPKK*
Ga0075470_1000028154F002489N/AMTENEKSQNLEDNLDMVNYIMLHRIYDLLTIIANKLVGPEDTSKLIQYHEQGFLLGPTPAYTPSEDSSENS*
Ga0075470_1000028155F021111GGAMNEWKKPSEISEIQTDGGQIKETDAMGREKFWEDLGRPND*
Ga0075470_100002817F001019AGGAGGMSNYAPSLEILEVNYSVSPGGVDTFEVYDKSEIEPVQLPIYETESLTEAVQFCYNLGRDFIVRTYAEWEMRELLADI*
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