 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006065 Open in IMG/M |
| Scaffold ID | Ga0081425_139657 Open in IMG/M |
| Source Dataset Name | Hotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA ? Sample 3, Mini-Metagenomics |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Stanford University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3000 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Near-Boiling (>90C) → Alkaline → Hotspring → Mini-Metagenome - Microbial Communities From The Yellowstone National Park |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Yellowstone National Park, Wyoming, USA | |||||||
| Coordinates | Lat. (o) | 44.564833 | Long. (o) | -110.86325 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003460 | Metagenome / Metatranscriptome | 485 | Y |
| F004367 | Metagenome / Metatranscriptome | 441 | Y |
| F076662 | Metagenome / Metatranscriptome | 118 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0081425_1396572 | F004367 | AGGAGG | MGNQTNGNGRDNGDRWTEGLLTGAGASVSLVLDDRQRHAVNLALEVFAYLLAALPSETVLTVDVIRFLKWYSRGINNAKSE* |
| Ga0081425_1396573 | F003460 | AGGGGG | MPRASRNERYMHDLQHVYESLYDVLAPRGLYPEAFLLLVVNLRRPGELRDVAIELVVRARAGGSPVWRAHDSLRVPGRMKLRSLADALCGLMLRATYDIEALVPLPGSDRERHQGGARA* |
| Ga0081425_1396575 | F004367 | AGGAGG | MGNQTNGNGRVNGDRWTEGLLTGAGASVSLVLDDRQRHAVNLALEVFAYLLAALPSETVLTVDVIRFLKWYSRGINNAKSE* |
| Ga0081425_1396576 | F076662 | AGGGGG | MPKASRNERYMHDLQHVYESLYDVLSPRGLYPEAFLLLVVNLRRPGELRDVALELVVRARAGGSPVWRAHDSLRVPGRMKLRSLA |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |