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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006065 Open in IMG/M |
| Scaffold ID | Ga0081425_156296 Open in IMG/M |
| Source Dataset Name | Hotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA ? Sample 3, Mini-Metagenomics |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Stanford University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7430 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (9.09%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Near-Boiling (>90C) → Alkaline → Hotspring → Mini-Metagenome - Microbial Communities From The Yellowstone National Park |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Yellowstone National Park, Wyoming, USA | |||||||
| Coordinates | Lat. (o) | 44.564833 | Long. (o) | -110.86325 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F038584 | Metagenome / Metatranscriptome | 165 | Y |
| F044249 | Metagenome / Metatranscriptome | 154 | N |
| F054062 | Metagenome / Metatranscriptome | 140 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0081425_1562962 | F044249 | N/A | MTKRDAILAFLAGSLTVVAKKYAMVLVALIVLGALANFLGWLHAVVSGEGCKAVKILQGTARLVFYIVFYLALLVALEQVAAYLIPPLLSVAILYEASLALKKAVQLNIIPASLVRQLTNVFRREPPEKAS* |
| Ga0081425_1562964 | F038584 | N/A | MTDTIKQIQKAAEELNAVLHATAATEEETKTLDAISKAAAHIRQQLREQMPNAGTRIKVGELRAARKLMQRYLQKTTVGTNIPREYIGESFYVTRQPVIEFIQDYLRTETLDVLAEITQVRLNPFTGAPAVVGEGGEKPTMGTTPQRVNSNYRKIAFTDRITDEALLSYPNIVDFLIWHGAYRIEVFLHNALIMAITAIASGATLPTGIPSPQIADLLIYMRAFHDQQAAIGPRGDWLANIAIVPFPYYWRLIFGGLKTTTGEYIQLDRQLQGLTLIASGTDQSNPTIVLNENELEVFYLGDITVNFGRVFDGASETNVRRLSMDLFYAPLPHPARPVLVADTESAINALA* |
| Ga0081425_1562967 | F054062 | N/A | MGNLRQLRWKDFCDGLDKDQPDEIQKEAEHIFFDHVFREVVLTFFQNVSELLLLYEAALSAPAMKPIADAKFNELFKQHPIPFYESFVPVLKNMGAEPEKATFLEICAYLNTYKS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |