NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075019_10148325

Scaffold Ga0075019_10148325


Overview

Basic Information
Taxon OID3300006086 Open in IMG/M
Scaffold IDGa0075019_10148325 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1370
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NamePennsylvania, USA
CoordinatesLat. (o)41.1289Long. (o)-78.4195Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002396Metagenome / Metatranscriptome564Y
F004392Metagenome / Metatranscriptome440N
F099394Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0075019_101483251F099394N/AATIKTTTIWFFSDIGFSFLTASEVVPPLTEQQNPRKSGCFQETEVSSI*
Ga0075019_101483252F004392AGGAMPVNGPETISDLKTSQPVTPEGRSVRAAKDTKPAVARGAATRRRRDQQESSKTNGEERFFLASANRNGDAPTLGRECATEAEAIIEAFREKVNLYRVTEFQTRADIGRSGEPILRKETLKKNNPAS*
Ga0075019_101483253F002396GAGGMRSLFPSTYDRADVLMSAGCSTFVSAALILVIPRVGIILLEILLGLFFIGCALAARARLRIQARSQVEEGPEGSTNSKTKWFDRYDVLMILTVVAVYSSVSGLLRHAGLSEGTVGILPLILFAAGILLKPRAVQFIERRRKDRTTGTHDGRAHVDAGEKQEIARKETVERCQ*
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