NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0080712_1015095

Scaffold Ga0080712_1015095


Overview

Basic Information
Taxon OID3300006149 Open in IMG/M
Scaffold IDGa0080712_1015095 Open in IMG/M
Source Dataset NameIntestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t14_698P_inflammed - viral_metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Texas Southwestern Medical Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1621
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Feces → Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa

Source Dataset Sampling Location
Location NameUTSWMC, Dallas, Texas, USA
CoordinatesLat. (o)32.73Long. (o)-96.97Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039198Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0080712_10150952F039198GGAGMQITSNEISNTKYMQIYLTKDELEKQETKEIIEKYKKEKYHISIFISGKENYPEILEKIIVKQVELNHNVC*

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