NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070715_10012449

Scaffold Ga0070715_10012449


Overview

Basic Information
Taxon OID3300006163 Open in IMG/M
Scaffold IDGa0070715_10012449 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3097
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001457Metagenome / Metatranscriptome691Y
F072804Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0070715_100124492F001457GGAGGMADHPQRWSSPFSQVELRRLWTYSDGALTVKGYRLPGGTARAGSWVLVDQATGNVQGVVPPGEFSRRFRPVDLFADVPAFATYLGTVTAADGTALVDLVLDRNPFMLANGPRRVARPHALIVPRSHRDGWSSATAAEMEACHTAMTVVAAWYRSMDGGHVVFCANDSAPNLDYLHDTEAADGNLADGGTDVAVTKNPRQDVQHAHLHAFYAERGGTENHESSALEGYPVIGAGYRAFSAALGSDAVKVESDSSRFASDVSAAAQPWGGSYCSYQLGVDGPFWVMPALGPSMDEFNQRLARADGLKAEPDPDLGGAINLVRPSLADAERLHAAQRATAGQRASFETFAVQHGLNTRSLGAGLAPGPPGAP*
Ga0070715_100124493F072804AGGMDQEARFQQSPRNGGQRGTSGLPGPLRRFADRLDEVRSADIVPMDQVGQVLVELAADEGFFGPLIAQLPSGSPGSRWLIRPERGPRLVLVHRPEG
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