NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070712_100224458

Scaffold Ga0070712_100224458


Overview

Basic Information
Taxon OID3300006175 Open in IMG/M
Scaffold IDGa0070712_100224458 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1489
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071499Metagenome / Metatranscriptome122Y
F076351Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0070712_1002244581F076351N/ATSKPDGDLMWNGVSKSFNPKSAKKIADGLVKEVPKQMEKDRLLPKRV*
Ga0070712_1002244582F071499GGAGGMRLFRLFTITSLLIAGVPRLAVAGVGAKSLWGLFDSDACEVVPELLGAWTSPGVTYSVRESHHNKYWIVVRDAALKTGKKLGLEICSAHIDRQLFYDATFLILGPDDKPTLPPEFVVDEDFPVDIVAGFWVPMHIIGKLEIEQNKLHFRNIDNEWLQVALKSRLITVASAQDDSGEYLLTANGRQLKAFVVSLSSNPKAFSEQLDLTRIPGRTLN*
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