NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0082386_105342

Scaffold Ga0082386_105342


Overview

Basic Information
Taxon OID3300006227 Open in IMG/M
Scaffold IDGa0082386_105342 Open in IMG/M
Source Dataset NameMarine sediment microbial communities, 10.1 km from oil contamination, ambient, Gulf of Mexico ? BC101
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterYale Center for Genome Analysis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)588
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)28.3Long. (o)-88.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060086Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0082386_1053421F060086N/AGQEDPFELDSNLLLSSGRHGRDRKRQYFLYDNETPLLGDLADLLY*
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