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Sample 3300006227
3300006227: Marine sediment microbial communities, 10.1 km from oil contamination, ambient, Gulf of Mexico ? BC101
Overview
| Basic Information |
| IMG/M Taxon OID | 3300006227 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0116840 | Gp0121719 | Ga0082386 |
| Sample Name | Marine sediment microbial communities, 10.1 km from oil contamination, ambient, Gulf of Mexico ? BC101 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Yale Center for Genome Analysis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 38890870 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 6 |
| Associated Families | 4 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| Not Available | 6 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico |
| Location Information |
| Location | Gulf of Mexico |
| Coordinates | Lat. (o) | 28.3 | Long. (o) | -88.2 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F030135 | Metagenome / Metatranscriptome | 186 | Y |
| F047147 | Metagenome / Metatranscriptome | 150 | Y |
| F060086 | Metagenome / Metatranscriptome | 133 | Y |
| F082867 | Metagenome / Metatranscriptome | 113 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0082386_105279 | Ga0082386_1052791 | F060086 | DSNLLLSSGRNCEDRKRQYINLYDHETPLLYDLADLLY* |
| Ga0082386_105293 | Ga0082386_1052931 | F047147 | TIIVAVTEGPVREEQLLHDMCLLGAMTVEITQILTRAR* |
| Ga0082386_105342 | Ga0082386_1053421 | F060086 | GQEDPFELDSNLLLSSGRHGRDRKRQYFLYDNETPLLGDLADLLY* |
| Ga0082386_121574 | Ga0082386_1215741 | F082867 | KSMTGGRKKGSRSRRVHHINDINHNDTNITVQYRVVKPLTFSSNTLVLSVNPSLTDLSTTLATIYRQYRVTELSFTFQCSDAAGAYALAMQYVPQIGGTPSTLPTTLAEFEGPAVGYCETGRGREYTYRVPSHVLNAMGLNYYATRTGVTPIQDPDILTQGLMIFLTSTPATPIVAYMHVKFEFQTLEDPSFLAKLMHDDKEADTLVVPRAKADSLKSMTWNQL* |
| Ga0082386_122586 | Ga0082386_1225861 | F030135 | DREELATLSSFTDIWHSTFAGCQFPDAILPGTEAIDLVAGPLS* |
| Ga0082386_125924 | Ga0082386_1259241 | F030135 | ATLSSITDIGHSAYAGRQFPDAILPGREAVDLVAGPLN* |
