NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0097669_113633

Scaffold Ga0097669_113633


Overview

Basic Information
Taxon OID3300006240 Open in IMG/M
Scaffold IDGa0097669_113633 Open in IMG/M
Source Dataset NameMarine sediment microbial communities, about 1 km from oil contamination, maybe ambient, Gulf of Mexico ? BC120
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterYale Center for Genome Analysis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)946
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)28.3Long. (o)-88.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082867Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0097669_1136331F082867N/ASSLSIPKERKMPKKKKNSRSRRVHHINDINHNDTNITVQYRVVKPLTFTSNTLVLSVNPALTDLSNTLATIYRQYRVTELSFTFQASSDAGAYALAMQYVPQIGGTPSTLPTLLSEFEGPAVGYYETGRGREYTFRVPSDVLNAMGLNYYSTRTAVTPIQDPDILTQGLMVFLTSSPNIPVVAYMHVKYEFQTLEDPSFLASLFDDKKQDNDMLVVPRPSLNSVGDAKGATWDENARGRIRGQSLGNNHFSSVTQP*

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