NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068502_1146308

Scaffold Ga0068502_1146308


Overview

Basic Information
Taxon OID3300006336 Open in IMG/M
Scaffold IDGa0068502_1146308 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8832
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (76.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002874Metagenome / Metatranscriptome524Y
F007052Metagenome / Metatranscriptome359Y
F018198Metagenome236Y
F038414Metagenome166Y
F097522Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0068502_114630816F007052GAGMEKNETYFVARLLKKGEFLSSEIFESLEEARLWAMKEAKLLISDLEMLRSTNVGDICVEIDKHFFGYEISSEELLKNSERVL*
Ga0068502_114630819F038414GAGMTREEQRDYTINEFYKKRTSPKTLQIQASKTVRSKAEWLHISTSEEDGEGQGTYDVGRRAMKRERLADKKLRAKQAKAAELS*
Ga0068502_114630821F002874N/AMKEKIDLSLNRSLSELESSYWEFVEATEGEDSSGWSKSVQEDLSALEGYLMKMEVL*
Ga0068502_114630824F097522N/AMKKLTKNDSSKRLAALVYDKALREQIEERVKSKYIKRIEYLVGANNELMKVLEQYEKVSMSEKI*
Ga0068502_11463089F018198GGAMAEENKVQIFINEKEILYSHQNIVAAINSFLPYLTNDDLDEMMKTFSTLKEHRRQKEYLALLEAREKSIQKNRHDT*
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