Scaffold Ga0068871_101250212

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068871_101250212

Scaffold Ga0068871_101250212

Overview

Basic Information
Taxon OID	3300006358 Open in IMG/M
Scaffold ID	Ga0068871_101250212 Open in IMG/M
Source Dataset Name	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	697
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: South Gull Lake, Michigan
Coordinates	Lat. (^o)	42.405765	Long. (^o)	-85.399014	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043488	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068871_1012502122	F043488	AGGA	MPIVQAGKQFTAADIKARAGDLAQMLQTHIQDGNELRAQLESWPDADLIELGLSQEEINAIKGFFVGDLPAMYNALVQSTWIKQLLGTGV*

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