NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078977_106242

Scaffold Ga0078977_106242


Overview

Basic Information
Taxon OID3300006409 Open in IMG/M
Scaffold IDGa0078977_106242 Open in IMG/M
Source Dataset NameViral communities from the deep bioline of CORK borehole observatory U136A, on the Juan de Fuca Ridge Flank, Pacific Ocean - passive in situ filtration, Fraction 20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)605
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Viruses Inhabiting Crustal Fluids Of The Juan De Fuca Ridge Flank

Source Dataset Sampling Location
Location NameJuan de Fuca Ridge Flank, Pacific Ocean
CoordinatesLat. (o)47.750184Long. (o)-127.740187Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F103293Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0078977_1062422F103293GGAGGMINIEKLKMLPPPYEIYEFVPCQPAYFKIVDVEMGRMTITPRFPGAPPRKEILAIRLHVDPKTKPFFPHYWDITPSRLVHQLAAMLLPTFPAEMWLRIHRDIPGPKAHFSVGWVEKPP*
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