Scaffold Ga0101566_11594953

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0101566_11594953

Scaffold Ga0101566_11594953

Overview

Basic Information
Taxon OID	3300006618 Open in IMG/M
Scaffold ID	Ga0101566_11594953 Open in IMG/M
Source Dataset Name	Soil microbial communities from the Leymus chinensis steppe, China - without N addition
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chengdu Institute of Biology, Chinese Academy of Sciences
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	525
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition

Source Dataset Sampling Location
Location Name	the Inner Mongolia Grassland Ecosystem Research Station (IMGERS), China
Coordinates	Lat. (^o)	43.63	Long. (^o)	116.7	Alt. (m)		Depth (m)	.1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087730	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101566_115949532	F087730	AGGAGG	MKQPTTVKEAKSMVKERWLDHRVEKLSRENDELRDAVDELRVDLDEAEGRSKETLAALSKNRRRPGRMKWLVLAGGAYVLGAKAGRARYEQIAGWARS

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