NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098054_1000932

Scaffold Ga0098054_1000932


Overview

Basic Information
Taxon OID3300006789 Open in IMG/M
Scaffold IDGa0098054_1000932 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15770
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045143Metagenome153Y
F054922Metagenome / Metatranscriptome139N
F062676Metagenome / Metatranscriptome130N
F103385Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0098054_100093219F062676AGGAGMKVKGKQVIENEESLEFAKSMRGQYIISQALYIASHRLECYEVDGDRRAEPSNRKDMEYLLKAFPLYKLVAHDTSIWKNLANNKQEEE*
Ga0098054_100093225F054922AGGAMIETKTTYNETTDGFVPSPEGVYPCHVVAVDSREYNGNKVFNFQFKVADEVANLKFPKMVSDGNGWYVQAQNQDGETVVQSGKPFAARKFYSKGVWFTPDPVKEERWKNRTYKEFCENLGVIFRTDGDSIILDEIESKDVVGKPCLATVVTNEYEKDGETKRTMQVGNVTLWKDGVALSEDELDSDLPF*
Ga0098054_10009328F103385N/AMIATKRKMKRNELIKRVEALEFVLSKVISSQRNVELIIDYYIEMNGNEEKFQKFLDKKAKDAESSEPKSK*
Ga0098054_10009329F045143AGGMEIQVDKLTLGQTIEALKKTSEGLTKLEIEYPDNYIVRKIVTMKQLVDHLDATNIILDEQDSYTN*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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