NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066658_10148325

Scaffold Ga0066658_10148325


Overview

Basic Information
Taxon OID3300006794 Open in IMG/M
Scaffold IDGa0066658_10148325 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1184
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044702Metagenome / Metatranscriptome154Y
F048880Metagenome / Metatranscriptome147Y
F055018Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0066658_101483251F044702AGGMMQRIINSKNLVAFVLAAATGMTLYFRVPFPETNTFLLVMALRSPSAFEVLKYSYTLFLFSTPYIGYSVVLS
Ga0066658_101483252F055018AGGAGGMSIINKPPQHVKREYELEEPVALVVEKYATFIDSTPDHVVNSALKIVLWRGTSTS*
Ga0066658_101483253F048880N/AETQRGFLSHLAAYQGLFRQLNTFRFLYIAPKAANFQRAEEGFRAIVKRPLESDVSSEILQYFQIRKKWDNHEYVIPVTADLEFLNEARRRFHGDRFETLYRAWRLGEVGDRELRAEFAQVKPGRSVYFDTYLVNGHVSPLTVGPETGEVCIKQDHHPALHVSRHPEGDAKLLGA*
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