NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075464_10004477

Scaffold Ga0075464_10004477


Overview

Basic Information
Taxon OID3300006805 Open in IMG/M
Scaffold IDGa0075464_10004477 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6543
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007747Metagenome / Metatranscriptome345Y
F016963Metagenome243N
F020510Metagenome / Metatranscriptome223Y
F033352Metagenome / Metatranscriptome177N
F081048Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0075464_1000447712F020510AGGCGGVSLQELLTMFSARVIGTYTPEQYANCVREARANRMRWGMGQW*
Ga0075464_1000447713F081048GGAVVSVKRLTWQIEILERAKKSLIDGRLVIARSRLDMALHIAKELLKRAQTYQKRDAEKKK*
Ga0075464_1000447715F007747AGGAGGMKDLGKITFGKARPAPKQILVDVTYDAKTAKALHAFGLKQLKKDPEAVIEYVIVKALEGFAKK*
Ga0075464_100044776F033352AGGAGGVSEFRLIENIEVMACRNSAERVVKALNRGEIDQAKQLARKHEIAWHLADREFQTLNQPHRNNDFCDDE*
Ga0075464_100044779F016963GAGGMIEVLPDETTHDQLLNRVRSLARQLAEAKAALAASEARENDLIDRIRSGL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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