Basic Information | |
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Taxon OID | 3300006900 Open in IMG/M |
Scaffold ID | Ga0066376_10119638 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1626 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Southern Atlantic ocean | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001625 | Metagenome / Metatranscriptome | 661 | Y |
F005948 | Metagenome / Metatranscriptome | 385 | Y |
F017844 | Metagenome / Metatranscriptome | 238 | N |
F066853 | Metagenome | 126 | Y |
F101840 | Metagenome / Metatranscriptome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0066376_101196381 | F017844 | N/A | YPRIGIQIAIPTEYYEATRRSPGYPFVNNAFVEKGVFRTMGETVCRHFRSQGKIRDIKL* |
Ga0066376_101196382 | F066853 | N/A | MVTITSKRGTSTINAQGLILKVSSKLPKNETITTNRGTSVIKTEDIPNVVKTDLKGQTITVKRGTEVITL* |
Ga0066376_101196383 | F001625 | N/A | MALTISTSDWTSANVRKTLSWQAALVSKLRVYAIKVTFGSGDNYATGGVSADLKEGRISTLVAVIPTYSNISREVVYDKANEKIKILEVGGSTGSAMTELANSSSATNSKIFEFLVIGY* |
Ga0066376_101196384 | F005948 | N/A | MVELNHDVVSFNSDTLVKGGHGVLVSVYVTKVGSGSNKVEFKNGTTSSGTVEFTIFTAAQGTYVNINRRFENGIYADCTGSAEITVVFK* |
Ga0066376_101196385 | F101840 | N/A | MATTYCSVEDVADYIRIPITATTVPNTTQIEKIIRRKEDELDRRIGHAWRSKKIT |
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