NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079218_11452908

Scaffold Ga0079218_11452908


Overview

Basic Information
Taxon OID3300007004 Open in IMG/M
Scaffold IDGa0079218_11452908 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Utah to study Nitrogen management - NC Compost
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)737
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)41.7655Long. (o)-111.8143Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072878Metagenome / Metatranscriptome121Y
F100015Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0079218_114529081F100015AGGAGMQNKKLSEDEVQKFMQGCEDLMLLGTKFTTSIRQAVIDLKSTYDPALKSQYVDPVVVELLTRSLQDFEKKVEANLEGIEKICTKGGKWFSFYLGRAVEKEFPGQAPSELPADVQKFETKREPTQLT
Ga0079218_114529082F072878N/AESLDRFFKANEELMKMGELFRGNIDAALDGFKTRLEAFLKTHFLEKAVAEMLAQSFNEFEREARTNLNGIDRICTEGGQWYAFCFGSALGRQVQPPGNPDADQGVKAKTKSAS*
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