NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099837_103950

Scaffold Ga0099837_103950


Overview

Basic Information
Taxon OID3300007156 Open in IMG/M
Scaffold IDGa0099837_103950 Open in IMG/M
Source Dataset NameIron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_top_diel_T=5 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1509
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027904Metagenome / Metatranscriptome193N
F067921Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0099837_1039502F067921GAGMESFERVDDRLLRNGQYLLVSYSGAKNPAQAMFTGFRVVKHNVTTLYYNFATEVPNFLPMAPYGTSPGPTNSPPYIDNFSFSLQEVKNVTDMFDITKTGDAYQVFYGISPSYLRVMNKVQRQFVSVLEQNIYPSNSFVEMGVDGFQSPLNNPSAKTEFIVFVNLTYNVTLMNTATIPIMPAFNFVINRMTLEPLGQAELKKAILAGFPIRSLGAVDSSIMISPDNYPGLVTLSYREIYGG
Ga0099837_1039503F027904GGTGGMEKYEPPEYDLFNLNNGSTAIGTTPAPLLYEGQANAAVIVPPDLTLRVKQVIIQNATTSLITVQLLAVTTVSGAPTPVAKTPPIPVPASSAVTLDEDEWSISVKSGYSLAAV
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