Scaffold Ga0104983

Basic Information
Taxon OID	3300007500 Open in IMG/M
Scaffold ID	Ga0104983_100019 Open in IMG/M
Source Dataset Name	Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763840445 reassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007500 Open in IMG/M

Scaffold ID

Ga0104983_100019 Open in IMG/M

Source Dataset Name

Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763840445 reassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	221753
Total Scaffold Genes	229 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (12.66%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

221753

Total Scaffold Genes

229 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (12.66%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F047127	Metagenome	150	N
F059076	Metagenome	134	N
F081454	Metagenome	114	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0104983_100019117	F081454	N/A	MKAFKFILLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMIMNIKYTLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVITQQKIK*
Ga0104983_100019131	F047127	N/A	MKKTFAFILFSIISLAKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGEKRQAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDVNYEHEDYFVKGNEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDSDIREILEKYNRK*
Ga0104983_100019134	F040685	N/A	MKKLLFKLFFTLAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFNTKPLMGQKEELPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSQQAFDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLKIITKEFGKKSIYE*
Ga0104983_10001928	F059076	N/A	MTNRILLLGLLLGGVSINAQNINETNAAGKTGQKVGINTTIPTRTLTIKNSTPNDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTISNVKGDWIANFDTGINYNKYAVAIMSATFKMPSPASGGIVMLRGGNNVPSVDFSGGKYGVTTAPATVLLQQHGANWAISADYPNIGVYELSSGSTTLGQPVNGTWVITLLVGKKDAVNFTELEFSQGGNNSGTGILDNTYKTGLENFLKKLE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104983_100019

Overview

Ecosystem & Geography

Associated Families

Sequences