NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105543_1000155

Scaffold Ga0105543_1000155


Overview

Basic Information
Taxon OID3300007666 Open in IMG/M
Scaffold IDGa0105543_1000155 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 765074482 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43680
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (89.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F051214Metagenome144N

Sequences

Protein IDFamilyRBSSequence
Ga0105543_100015524F051214AGGAGMPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNTTDLIEYQLKNGDSFIVTYDPIHRIIIMRAFLHDEDITVKPIYIYNNREYQIACEFLRQIMHDKIDLKKEWLV*
Ga0105543_100015527F018385GGAGMAEYVNRWDPYSELSIEKNRIPVLDDHLIYGTNVEHYTLTVYSPEGRVSKYWNARILKDDLGRCRIACPREGKILCFSWFDWDAHMFTHDGMNELVFTPKLNSRSPQSLWSKKEVK*

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