NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007666

3300007666: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765074482 reassembly



Overview

Basic Information
IMG/M Taxon OID3300007666 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052778 | Ga0105543
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 765074482 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size134307418
Sequencing Scaffolds22
Novel Protein Genes26
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes4
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium4
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F030786Metagenome184N
F040685Metagenome161N
F043990Metagenome155N
F047127Metagenome150N
F049707Metagenome146N
F051211Metagenome144N
F051212Metagenome144N
F051214Metagenome144N
F054111Metagenome140N
F057446Metagenome136N
F061925Metagenome131N
F061927Metagenome131N
F064818Metagenome128N
F071329Metagenome122N
F080165Metagenome115N
F084362Metagenome112N
F097525Metagenome104N
F097526Metagenome104Y
F101359Metagenome102N
F105377Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0105543_1000155All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes43680Open in IMG/M
Ga0105543_1000159All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes43184Open in IMG/M
Ga0105543_1000160All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes43140Open in IMG/M
Ga0105543_1000211All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes37608Open in IMG/M
Ga0105543_1000695Not Available18715Open in IMG/M
Ga0105543_1002803All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae6503Open in IMG/M
Ga0105543_1002884All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales6352Open in IMG/M
Ga0105543_1005628All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium3703Open in IMG/M
Ga0105543_1006530All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae3264Open in IMG/M
Ga0105543_1007733All Organisms → Viruses2835Open in IMG/M
Ga0105543_1010163All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.2253Open in IMG/M
Ga0105543_1011399All Organisms → cellular organisms → Bacteria2037Open in IMG/M
Ga0105543_1012426All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1890Open in IMG/M
Ga0105543_1014097All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1693Open in IMG/M
Ga0105543_1014710All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium1636Open in IMG/M
Ga0105543_1015195All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga1590Open in IMG/M
Ga0105543_1015802All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1538Open in IMG/M
Ga0105543_1015810All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1537Open in IMG/M
Ga0105543_1019673All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium1264Open in IMG/M
Ga0105543_1021033All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1184Open in IMG/M
Ga0105543_1024283All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium1040Open in IMG/M
Ga0105543_1034688All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium747Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0105543_1000155Ga0105543_100015524F051214MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNTTDLIEYQLKNGDSFIVTYDPIHRIIIMRAFLHDEDITVKPIYIYNNREYQIACEFLRQIMHDKIDLKKEWLV*
Ga0105543_1000155Ga0105543_100015527F018385MAEYVNRWDPYSELSIEKNRIPVLDDHLIYGTNVEHYTLTVYSPEGRVSKYWNARILKDDLGRCRIACPREGKILCFSWFDWDAHMFTHDGMNELVFTPKLNSRSPQSLWSKKEVK*
Ga0105543_1000159Ga0105543_100015912F051214MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDFEDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKKEWLA*
Ga0105543_1000159Ga0105543_100015915F018385MMADLINSWLPYQELSIEKDRDPVLDDEIIYGNNVKHFTLTVYSPEGRVNKYWNTRILKDQVGYCRIACPREKKILCFNWLNWTAYMFSHDGLNELVFMPDSRRRTVSQLSFDHVPMKEVK*
Ga0105543_1000159Ga0105543_10001598F027205VASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0105543_1000160Ga0105543_100016034F049707VVSEYKSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMRPSLYDVERKAS*
Ga0105543_1000211Ga0105543_100021112F071329MLPVAKIILSGLTSIGAGMIASKLTKPLVSNSSGIAKILLWFGSVGTGIAASAIIAREVEKQFDETVAAVKEARSHVEIED*
Ga0105543_1000211Ga0105543_100021113F018385MAENKWDSYLEGSIEKDRDPALDDEIIYGVNVKHFNLTVYHPNGRVKKYWNARILKDYLGYCRIACPRDDKILSFNWFNWTAYMFTQSGVNELVFMPHSRRGIVSKLSQGN*
Ga0105543_1000695Ga0105543_100069511F084362MSLMNCAFTVRWSDEKNKPHAKTYATEVDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKQSETEAEQKGFWWEK*
Ga0105543_1002803Ga0105543_10028034F061925MSWEYSINLDSEEAVSSVVTDLKICELSSSSTTDYIDWKNSKPIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHDYHLTDCDTDEEVTLEHIFRSVI*
Ga0105543_1002884Ga0105543_10028847F030786MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDDDGADKIFENNNNRILNTINSQRISFDSQSAEYSKPQLFLLYQSLKVDC*
Ga0105543_1005628Ga0105543_10056286F040685MKKLLFKLFFALAFTSIPLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRVFTKKINLDKFKKLRDGPSEQTVDGQDEVIIIKTDKKTYRKMNAYGNDHDRETWYDLLQIIAEEFEKI*
Ga0105543_1006530Ga0105543_10065303F057446MNSISFGKTTVTSYPEYFEIADNKKTNKLLYLSASFVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINAESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0105543_1007733Ga0105543_10077332F105377VRAEMRDFDKLPLLTPEEAFERAMEMGWNRPLFDHGYRVRGLNDWRAIETLLRQYDVEDAVIASFGLKRFEEIFDAFAMLHERGWHLWQTSANVYVGGELRTVPAIRAHYRGD*
Ga0105543_1010163Ga0105543_10101632F097526MTTNDTKAITIYTQDDYRRLCERLDDDTVTALLHAHIRAFAADGSQALLKRLTEGLRIAGEMEKAGRNGHPDPAEQARRERWDCQFTVLQQQARMAHCEIVNADNAAVSRLTRQCEKSGSCDTAIPLPRDDYGFAAALRDFPLNEHQTALLWRMALLTIAEITDATPSLVAHYLNGIGGERLGRALAGKTVYPVTVVSNLAWLLHEQQKSGQLQRDLWHSAAALGSGDAEVREKPQ*
Ga0105543_1011399Ga0105543_10113991F043990MIKKLGIIFTFGVIILEIVVYANHKIERSWIEGEFGVNMSNMNIDEKYREEEWVPNGDGEKTIILTYDQLDSSFTKSNKLPIKEDLPPNGIPKQFLNNTNGYYKYIGDENDDWNFGILIVDTTRKEICIYYQIL*
Ga0105543_1012426Ga0105543_10124262F080165MKSIKILLLLLSLTACNNKTKTISTLDLEKVVINYKELPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEEDSLQYTFTRYILR*
Ga0105543_1014097Ga0105543_10140971F051211MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRSEFFRGNPKDFYTAIDKWLADTRAHQSS*
Ga0105543_1014710Ga0105543_10147101F061927MKKSIFILSVMFILGACSSDSAQKATEKIKNTYSEGLRKTFIKEGIKSCIENSGLKESEARKYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSC
Ga0105543_1015195Ga0105543_10151952F054111MNKSLESITHEEFLKLMERLKNLQELTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETESLSTADRDLFLNILNKEILFLI*
Ga0105543_1015802Ga0105543_10158022F101359MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQRQSFTDSYKETVK*
Ga0105543_1015810Ga0105543_10158101F064818MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKDVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQISHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0105543_1019673Ga0105543_10196731F097525MQQKKIMFKIQNAYQKIIFSIHGHRERRGDFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEMLGLLEWFEQISANQETPAEIGFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYELTFPLDDKTLAMIIKELGEAVASFKKE*
Ga0105543_1021033Ga0105543_10210331F051212MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTDGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQVIDIKYSKLYNHLNLEK*
Ga0105543_1024283Ga0105543_10242832F047127MKKTFAFILLIIISLVKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGQYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*
Ga0105543_1034688Ga0105543_10346881F054111MVFKNLEKENMNKPLDNITHEVFLKLMEHLKNLQEFTFLEYIIAPEADIFYFNFMKKTVKIKWGLDYGLSLETKALYTSDKDLFLNILHKE
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