Basic Information | |
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Taxon OID | 3300007735 Open in IMG/M |
Scaffold ID | Ga0104988_10842 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 33213 |
Total Scaffold Genes | 58 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (18.97%) |
Novel Protein Genes | 17 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (11.76%) |
Associated Families | 17 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001808 | Metagenome / Metatranscriptome | 631 | Y |
F001883 | Metagenome / Metatranscriptome | 622 | Y |
F003299 | Metagenome / Metatranscriptome | 495 | N |
F003327 | Metagenome / Metatranscriptome | 494 | Y |
F004234 | Metagenome / Metatranscriptome | 447 | Y |
F004451 | Metagenome / Metatranscriptome | 437 | N |
F006463 | Metagenome / Metatranscriptome | 372 | N |
F008079 | Metagenome / Metatranscriptome | 339 | Y |
F009004 | Metagenome / Metatranscriptome | 324 | Y |
F009958 | Metagenome / Metatranscriptome | 310 | Y |
F012974 | Metagenome / Metatranscriptome | 275 | N |
F015420 | Metagenome / Metatranscriptome | 255 | Y |
F029102 | Metagenome / Metatranscriptome | 189 | N |
F034772 | Metagenome / Metatranscriptome | 174 | Y |
F034842 | Metagenome | 173 | Y |
F045550 | Metagenome / Metatranscriptome | 152 | Y |
F071222 | Metagenome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0104988_108421 | F045550 | N/A | LALILSSIEIMSINENYKIVKGIDLWQSAKLLFARAKEVKDNINKLK* |
Ga0104988_1084224 | F012974 | N/A | MFTQAEQVIIQEVANLPEKEQSYKINLIKLKRIKDRIVGYEKECFCSSVRRKIWYKDFTQWYETFT* |
Ga0104988_1084225 | F004451 | AGGA | MRPLLDNYISAHYKEIRKYTNYFLVRMKSTISADAVINNSFLYLCNIDIEVTDVGKVKAYLLNTIKMQILWSTSLTNRQERVTATDSTMPILMDDDTDLWDKIREDMQYQNNMAVIETYRGSITDRIKLIVFQTYFDKGYSTARAMSEYFKIPVTSAHYWIQEIKNDLKQLKDEN* |
Ga0104988_1084226 | F008079 | N/A | MKIKDEFIGVKVSHKGNNVNVSADNYTFCESIGLGYMFEEPTVSQPKVIKYKAIKPPIPEPEPEVTDEDGTEAE* |
Ga0104988_1084233 | F034842 | N/A | MISYQSIVDKITAFYNNHLQVKKVGSDFKEQMVNFATKDEKYPIVYVVPTGVTPYENVSIFNLEIYCFDIIQMDRANITTILSDTQQILQDLYLEFTFSDDYDFDIDGQPTFIPLNNDLLDYAAGWQMNISVVIPSWTNCPIPKKIYTAYSQAIQWLELFPQNTITFFCNGVQFDVQTTVLSGSITDFVEACNNNLDGSNFTQYGTYFDNGDDRVRLEIPYHVYNNLCANGEVTLKISVI |
Ga0104988_1084234 | F001883 | AGG | MANILKRIVRNDIVQNNGTLVESIRINAKVTGFGSLEIEIIAMYYFIFLNNGAHLWNDGVIVPRDWVATFTRELASAGITNEIYSQYVEWISKNYPILEVAEILQSDQRLTYTFYALDPPAGFQQGFPLYV* |
Ga0104988_1084243 | F029102 | N/A | MKHSGVLSFLVFGFGYLTGISLLFEPALYLKFEGCLAISYFTFLLVSEIEEKQ* |
Ga0104988_1084246 | F001808 | N/A | MRYLAIILLLSSCSAQYHLNKAIKKGYTCSETGDTIRITTLDSIPVIIHDSIVWEKFISTKDTIIKYNTVYVPKTRLDKKIEYRLKVKTIYKDRIVEKAKAKATTPRTRGNLNLLFVGVAIGLLLSYLFKFARERYLF* |
Ga0104988_1084248 | F071222 | N/A | MDNQKIMEIIFAEEAELLDQAVELKDTFGANDDATKRAYSKWVTITNLIDRINEETN* |
Ga0104988_1084249 | F015420 | N/A | MKRLINYFTPVGAEQKAFAIAMFIVTSVTLSILFLFTFLELIL* |
Ga0104988_108425 | F009004 | N/A | MKTEFNKVIDFLETQQQENKLNTNQLHLIIQTLVTFLDDEQLQEVQNLFNHFKK* |
Ga0104988_1084250 | F004234 | N/A | MNFIDLHKRDNTYFSNWTTDYDSTVYIAGTIEPFTYHAEENDNEWTSLFILNNEELNLLKSKL* |
Ga0104988_1084252 | F003327 | N/A | MTEFTQLAIEVQNAIANGEYTHQKYLRFREWYFKNYEGSKRNAVRDFAMFDLMYGLDVPIKNNDNEDI* |
Ga0104988_1084253 | F003299 | N/A | MKIYKVVFKTFDYWGGPIKLVTRIVEAYDADHVKQLIQKNDDLIILIEPV* |
Ga0104988_108426 | F034772 | N/A | MKNLINYFTPTTEEHKSFLRHFLGTLTTFIVFGGMFYCLMYLKAL* |
Ga0104988_108427 | F009958 | N/A | MKNRNLEIHNREWNLNYEFTGWQYSIAGTWEFNDYDEVSEYAFIELDVEISQKWIIETDDHLQPHVLGVRLLEDLRLEMQEAINSDLAHYNFWEWKTSNDDSNYTFYYEL* |
Ga0104988_108428 | F006463 | N/A | MNKGTIYEQMDWWQRQWRGSFDLMLYLEICRIKKNEQTKFKEMKRFKATFKTWAYVGAPMIIETRIVEAYDVQHVKNLIQKNDDIIIEIKQIEK* |
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