Scaffold Ga0111098_10645

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0111098_10645

Scaffold Ga0111098_10645

Overview

Basic Information
Taxon OID	3300007885 Open in IMG/M
Scaffold ID	Ga0111098_10645 Open in IMG/M
Source Dataset Name	Spring water viral communities from Black Pool hot spring in the West Thumb Geyser Basin, Yellowstone National Park, WY, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Roche Applied Science
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1186
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline → Planktonic → Spring Water Viral Communities From Black Pool Hot Spring In The West Thumb Geyser Basin, Yellowstone National Park, Wy, Usa

Source Dataset Sampling Location
Location Name	Yellowstone National Park
Coordinates	Lat. (^o)	44.41822	Long. (^o)	-110.57182	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003460	Metagenome / Metatranscriptome	485	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111098_106451	F003460	GGGGG	MPKASRDERYFHDLQHAYEVLNEVLSPRGLYAETALLLVASLRRPGELRDVSIELVIRARAGGSPVWRAVESLRIPGRMKLRSVASVLFGLMMRATYDIEAQISLPGDDAPGPSGRARILPRS*

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