Basic Information | |
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Taxon OID | 3300007907 Open in IMG/M |
Scaffold ID | Ga0111546_101525 Open in IMG/M |
Source Dataset Name | Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Liverpool |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2317 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → unclassified viruses → Virus sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment |
Source Dataset Sampling Location | ||||||||
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Location Name | United Kingdom | |||||||
Coordinates | Lat. (o) | 54.9632021 | Long. (o) | -1.6348029 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000613 | Metagenome / Metatranscriptome | 985 | Y |
F003678 | Metagenome / Metatranscriptome | 474 | Y |
F106095 | Metagenome / Metatranscriptome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0111546_1015252 | F000613 | AGGAG | MPLVKKRLSIAAGATSDQVLAGSTYEYVDPGTRLVVAAAVDTVGSATADTTMDFNVNNAEFSKNASVSAIVTGEPFGWNGNYVMNDMVTTGQVRNRPVITFTNGTSATRTVDVAVFIGG* |
Ga0111546_1015253 | F106095 | GGCGG | MSFLSNLIKKAAPVVATVAPGTPIGEAARVVTVAQQQQERKYQKKLAIDAQAARQREINNMEFRDTDALNRTIYGNTGGTLPTVRQGFGSSFGTFLGDVGQNILNPLSGLFSQVRPFISQQSVGQPALSTRSTIGGQESQQSGVTQGFMGGFGNLAGQASRFLRTPGGQIGTGLLTGIGASMLSGGNGGMRITRKMKSQYRAVLNLAQGDYDQAAAMIGVSTDQFIAVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRKAPMRRASTTLISNK* |
Ga0111546_1015254 | F003678 | N/A | MDQFMLYAPLIIASIALFLCLYACVRVGQFINASKGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMMQLMQRQPNQQMNGSIKNVGG* |
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