NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105746_1004569

Scaffold Ga0105746_1004569


Overview

Basic Information
Taxon OID3300007973 Open in IMG/M
Scaffold IDGa0105746_1004569 Open in IMG/M
Source Dataset NameCoastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3794
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location NameOregon, USA
CoordinatesLat. (o)46.2357Long. (o)-123.9153Alt. (m)Depth (m)1.2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005293Metagenome / Metatranscriptome405Y
F006181Metagenome / Metatranscriptome379Y
F019614Metagenome / Metatranscriptome228N
F029411Metagenome / Metatranscriptome188Y
F040616Metagenome / Metatranscriptome161N
F071981Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0105746_10045692F029411N/AMNVDFSTIDPQNELSDLYTPDYREEALNEDRYLEMAYEDRFEMPCMEDYQ*
Ga0105746_10045693F005293AGGAMNVDSVPFIPTRDDLIGYISDTYKEINGFRPRPTWSELTYNQLDQWGRQLAAEAVTHRKQEVIRNRIARGLRRAQQRAWVEKKRGYFTPSTFTLGNVVNF*
Ga0105746_10045696F040616N/AMDPEDIAYEDSVSSDTAGWPGDGSGEDDFADYNQNEAGDYSNE*
Ga0105746_10045697F071981N/AMKITIEFDTDNAAFEDNQFAEVDRILKLVGEYAYEHMLYPNYQLDRNIKKGHKIVDTNGNTIGKFKIVI*
Ga0105746_10045698F019614AGGAMNTASIASNKIKVEYSTVPGDNREFLTFSVPNGWDDVKRLTNRVLTYNNKDFTFSGWNSDRNECYFVRLVNGMSFVATIK*
Ga0105746_10045699F006181N/AMKRNLIHVIYPDEAVNSFVMTTDMSTADILERVFAEWNHGSGRECEMFINSKKRSLSVNDIVCVNGTYFQCASFGWHEVSPEYVNALEEAVAQHPSRLDGAWFALSEVMWGRKCVVETV*
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