NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1005131

Scaffold Ga0114340_1005131


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1005131 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10843
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (69.23%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000376Metagenome / Metatranscriptome1216Y
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F003560Metagenome / Metatranscriptome479Y
F003582Metagenome / Metatranscriptome478Y
F023339Metagenome / Metatranscriptome210Y
F068743Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_10051311F003560N/AQHYAMLIKEAWRTVEDADQAGQLNVKATALKLIADIEGKRIGMLQQVGLLDNAELATQIAETEHKQEILVKILKEVTATCPKCKMEVAKRLSQITGVVEPVVINDESAEVL*
Ga0114340_100513116F023339GGAVWCYEGNTTGDGKKGSQRNGGEAAKKLRAYKKNKAGVMVSIVGFGRPKFKGGAKPAAPSVTPVDGVCPTCGK*
Ga0114340_100513117F003582N/AMKTYSIKIEVNAEVQAFSEEDAAEYINDIFGIDDEVKTVKVISIKEK*
Ga0114340_100513121F000473AGGMFIDKSADKEREHFKYGINQWTGEPNKPVFYNDEMKKKVREIKKPVSNLMMDIVMYPEFLALRLYEDNFIQYVGIQKEMVIDYVSRVKKLIESYS*
Ga0114340_100513122F000671GAGGMDKILCYSCNKTKNKLNAKKSTLLPINLLMCETCINSKFEPRWVVILAGRQNGMDYVKDFVVKRRYIGNEIAASELII*
Ga0114340_10051314F000376GGAMSIYQEKAKECKCCGKHVPLPTVLKEYNGLMLCPTTFANMIEYKRLWKSLGARPPGNIRKHFSDYVQQLVETTIDKNEDGTL*
Ga0114340_10051317F068743AGGAGMPWKIEEGAAGCRGFAVVKEGGELVGCHPSRSRAEAHMRALYASEADTKKMEDKKKKIY*
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