NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114344_1000371

Scaffold Ga0114344_1000371


Overview

Basic Information
Taxon OID3300008111 Open in IMG/M
Scaffold IDGa0114344_1000371 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43404
Total Scaffold Genes100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)81 (81.00%)
Novel Protein Genes24 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)21 (87.50%)
Associated Families24

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F000447Metagenome / Metatranscriptome1128Y
F000450Metagenome / Metatranscriptome1126Y
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F000852Metagenome / Metatranscriptome860Y
F000868Metagenome / Metatranscriptome853Y
F001043Metagenome / Metatranscriptome794Y
F001176Metagenome / Metatranscriptome756Y
F001280Metagenome / Metatranscriptome732Y
F003582Metagenome / Metatranscriptome478Y
F003663Metagenome / Metatranscriptome474Y
F006744Metagenome / Metatranscriptome365Y
F008132Metagenome / Metatranscriptome338Y
F008245Metagenome / Metatranscriptome336N
F009530Metagenome / Metatranscriptome316Y
F014142Metagenome / Metatranscriptome265Y
F038205Metagenome / Metatranscriptome166Y
F038643Metagenome / Metatranscriptome165Y
F061860Metagenome / Metatranscriptome131Y
F072321Metagenome / Metatranscriptome121Y
F105019Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0114344_100037110F038205AGGAMGNISEIIAVACDECGGAGFLFWGDENNYDVEACECAIEDWNI*
Ga0114344_100037114F038643AGGMIDTTNWAKFPFAVDGVEFVSMLDPNGSMYQQASKVPTQVFNSMNEGAIRELIGKVSLMSKSEIQDELDRVNDGFGQAYLALA*
Ga0114344_100037115F003663AGGAMLSTAIEVLDATKESIFDEDIMGMAGELHTRRNELSDEIFAKYLFMYSSAVAAKVADRVTQVLLTKEQLTEMLEALDEMDNLSETILEENE*
Ga0114344_100037124F000311GGAMYFELTAPSQLALKRAFWDAEITGLDPQLIGPLTFNIGTGSIEKVSRIRDKFNLKETYFSEYETTGY*
Ga0114344_100037125F001043AGGAGMSDYRDGFDDGYKFAREEIIEKLREIDIHDIDTWLLDRLADMIEGNNL*
Ga0114344_100037127F000450GGCGGMGNRANFVFVQPNGESIVLYGHWAGNQMLANLAEAVAKAQPRWSDPSYATRIAISHMIGETWSMETGWGLHVNEIGDNEHKIPVIDFTQRTFSLHQEDDFRNTDNKVRGMSNEAIFTQDLATFCEKYSDSPLLAMV*
Ga0114344_100037129F000868AGGTGGMSFLENENQMVIDATYQEIGEMLVEDWVNSNLDEGQLYADFRFAEMADNNYLKGRFNLFYDLKPGDQYYLEYDEEA*
Ga0114344_10003713F014142GGAGMNTISVIVEPSHSMASSNTKSNEVFRLANGNYISRKAYVYMVASEGLISHRYLTPNESRWVFENRVR*
Ga0114344_100037132F061860GGAMMNTTTLEPRLQKLIDLGEAGTDILHGELKNMMYECEQVLVPLLQNSNELGSDENYDDTVERLYNEGYMDALTAVYTLTYQLAFAINERAKKNG*
Ga0114344_100037135F000852AGGAMTTTTKRAYLKSKGITVGARGRFSGAAKTAIQEAEKSGINFISEAAARKSSSNN*
Ga0114344_10003714F009530AGAAGMTITYSIWQGSRLLSIDNVAHEIKAIDHLIDTLNASELGKKVKFSANVQSIKVGK*
Ga0114344_100037148F001176GAGMSDNGTGMQTPPNNQPSGAVTSREAGRKNPSQGKFRSGIKVDTNKHGIRRETTNVPKRTGRPKKV*
Ga0114344_100037149F001280GGCGGMCVECGCESVGSETGVVNVGLNDVSRDGDAGLTLKMTATPEQRERFINE*
Ga0114344_10003715F008132AGGMTKWDTIQADVSDMYAHLAEEEMYEKMMAEEEDVFGFAKAIQIDHLTDEEVDEIFDMFGDK*
Ga0114344_100037152F105019AGAAGGMAKHLDKIAKSLEIRRSNWKNPAGKAPGSMNKKKTGYSRVKANGSK*
Ga0114344_100037164F000671GAGGMEKITCYSCNKSKHKLNVKVSTLLPINLLMCETCINSKFEPRWTIILAGRQKGPEYVRDFILKRRYVGNDISASELMV*
Ga0114344_100037166F000473N/AMSTDHFKHGINLWTGEPNKPVFYTKEMAQKIREINKPVHDLQMDIVKYPEFLAIRLYEDNFIQYHGTKKEMVIDYIDKVKRTLESFGVRCVLEGKPSERIL*
Ga0114344_100037170F003582N/AMNTYSIKLEINAEVEAFSEEDAIDYANDIFGIDEEVKSVKVINVREK*
Ga0114344_10003718F000447AGGAMGYIEIFRLDEQGAGWVDLSEATPAEMLDLEIGLFQEGAI*
Ga0114344_100037186F000376AGGAMSTYQELAKQCKCCGKHVPLPTVLKEFEGTLLCPTTFANVMEYKRIWAAIGSRPTGSVRKHFSEYVQEIVEKSLVKNEL*
Ga0114344_100037188F000369N/AMELDLADHYDRMNRVVEELLKGNNPTQIASLTGFKRAEVIEYIDEWKQVVRNDSTARDRAKEAISGADQHYAMLIKEAWKTVEDADTQGQLNVKATSLKLIADIEGKRIGMLQEVGLLDNVELATQLAETERKQDILVKILKEVTASCPKCKMDVAKRLSQITGIVEPIVINEEVNGL*
Ga0114344_10003719F006744AGGMNLEEFKAHVIAQREASKAEALSVLSATISTTTGKEN*
Ga0114344_100037194F072321GAGGMKLADLIKTKANKVLGIDASTNSVAFCLMENNVPIKWGKIEFVGADIYEKIYDAKVKMHAMLDELKSDYIVVEGAVLVRSPDAVIKLSYVYGVVIAELMSTGAKVITISPTAWQAHIGNKNPTKDEKSAIRAANPGYADSWYKNKLRQIRKQRTVDFFNKKYNIALDDFDVADAFGIAHYSNTVLTER*
Ga0114344_100037197F008245GAGGMAEDKNTLELISDITEFNDLHEFMKDEHLDRALSIVVKLLMNPDVPSAKAPHLIMELQAMSTKFAVLASYYSTIAKDKAGTSNNNKKNVYYSVKESIDKLVDALKYVVRYNS*
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