NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114347_1004549

Scaffold Ga0114347_1004549


Overview

Basic Information
Taxon OID3300008114 Open in IMG/M
Scaffold IDGa0114347_1004549 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7910
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025215Metagenome202Y
F030660Metagenome184Y
F043220Metagenome156Y
F046858Metagenome / Metatranscriptome150Y
F073073Metagenome / Metatranscriptome120Y
F103146Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0114347_100454910F030660AGGMSGDDIALDFMTEHEIAEIMATEDIFQVDMTNLDDLLEDVASDSDYE*
Ga0114347_10045492F103146N/AMSEPMYLMGDEYALKGTEDDVDENDDSGLPDRMWEDDE*
Ga0114347_10045494F073073GGAMTGEVSVMELLDKYMISSDGKTSTGFTKSIILNDGTNQYSGRLHWDSNDGYTMAWDTKPAPEADRPEFEYSLDSITEMDNQ*
Ga0114347_10045495F025215AGGAMKKVKVHDPRGDVMADVYDYAAAALLMSLYGNGSTIRYKNRILWLEGADGEGAESYDTTAITVIKRLDEAGIK*
Ga0114347_10045498F043220AGGAMAKSVSANNVDYANEIILTLSRDELETVRESLRQFSINNTRQGFTARAKYADDLRDKIVNVILDSVQRRIDKAKELV*
Ga0114347_10045499F046858AGGAGMYIEITDTIAIIIALTTSTTLVITTAIRNAKLTRALRELSVK*
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