NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114347_1025112

Scaffold Ga0114347_1025112


Overview

Basic Information
Taxon OID3300008114 Open in IMG/M
Scaffold IDGa0114347_1025112 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4498
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000671Metagenome / Metatranscriptome945Y
F003582Metagenome / Metatranscriptome478Y
F011938Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0114347_102511212F011938AGGVKEYYDVVHIVYIHSDKCYGAVEKLGAYASMVRYKKNDEEIEELMENEDFTIMEEIIFKHVEEQE*
Ga0114347_102511213F000671GAGGMEKILCYSCAKSKNKLEAKRSSLLPINLLICDTCITSKFEPRWVIILAGRSNGPDHVKEFILKRRYVGPEVSASELLI*
Ga0114347_10251127F003582N/AMNTYRVKIEVDAEVQAFSENDAVDYVNDIFGVDDEVKSVKLLSVKEK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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