Scaffold Ga0114319_1000016

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114319_1000016

Scaffold Ga0114319_1000016

Overview

Basic Information
Taxon OID	3300008150 Open in IMG/M
Scaffold ID	Ga0114319_1000016 Open in IMG/M
Source Dataset Name	Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 246515023 reassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	174109
Total Scaffold Genes	126 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (23.81%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 278	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051213	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114319_100001650	F051213	GAGG	MGSYEQSAGGDLSGGYTYTCKRKPFARRTGMHRYSCLAKQIHPMNLYKILGALILALSFVFTSCDWVANEPTIEGNIDKYFDSSAQRKSFRVVNASGKRYNHKVDWHIIGITQLDSDTFFTKKVDTLPNGDLKISYDWVSFTVKERKSVIEVEVQKNETGQDRSVFFATRNNRYQAHRPNMIIMQFAK*

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