NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114336_1006646

Scaffold Ga0114336_1006646


Overview

Basic Information
Taxon OID3300008261 Open in IMG/M
Scaffold IDGa0114336_1006646 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7714
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (61.90%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.236Alt. (m)Depth (m)5.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F001280Metagenome / Metatranscriptome732Y
F012975Metagenome / Metatranscriptome275Y
F014017Metagenome / Metatranscriptome266Y
F023851Metagenome / Metatranscriptome208Y
F078716Metagenome / Metatranscriptome116N
F088905Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0114336_100664616F014017N/AMDIEEYQDERIRRQISNEIRGLELPPEWRPHEVIRYIVRIIEKGV*
Ga0114336_100664619F088905N/AMSDNTEKDIVATPVVEAKPEIKEEPKVEVKAEAAPAADSVVDYWANAWANRGV*
Ga0114336_10066462F012975AGGMLNLTLKGVEVFIKRSTTKNQESYWENYDLLIWKQSAGGFTDIKGMFRKDQWGVAERIPVNENGIWKLPSKYVRHFR*
Ga0114336_100664620F001280GAGGMCIECGCEAFGSETGIIPVTVTDVSRDGDSGLTLNMTSTPEQTRQFINE*
Ga0114336_100664621F078716N/AMSDNGTGTTPAPISEPSGAVTSRETPRKYPKQGTRSGIKIDQNKHGIRRETSLDPKPPRKTRPKKV*
Ga0114336_10066464F000473AGGMEFINKDKNHFKYGINQWTGEPNKPVFYNKVMADAVRGIQKPVTGLQMDIVKYPEFLCLRLYEDNFIQFTGNKKEMVIDYLQKVKKVIESYGVRCELEGVPSQNVLGKGI*
Ga0114336_10066465F023851N/AMCETCISNKFEPRWVIILSGRQLGPEAVKEFIVKKRYIGNDIAASELFV*
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