Scaffold Ga0103551_100064

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103551_100064

Scaffold Ga0103551_100064

Overview

Basic Information
Taxon OID	3300008310 Open in IMG/M
Scaffold ID	Ga0103551_100064 Open in IMG/M
Source Dataset Name	Microbial communities from the gut of humanized mice in USA - PM96.FECAL.14dpc
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	CCME-COLORADO
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2123
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Microbial Communities From The Gut Of Humanized Mice In Usa

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	38.65	Long. (^o)	-90.26	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103551_1000642	F047125	AGGA	MDVVLLLMVLGVMSSGFWAADALDHMRKEILQQEGKRRGWWS*

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