Scaffold Ga0115191_100003

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115191_100003

Scaffold Ga0115191_100003

Overview

Basic Information
Taxon OID	3300008518 Open in IMG/M
Scaffold ID	Ga0115191_100003 Open in IMG/M
Source Dataset Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764508039 reassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	363715
Total Scaffold Genes	414 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	249 (60.14%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	National Institutes of Health, USA
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F103430	Metagenome	101	N
F105376	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115191_10000333	F103430	AGGAG	MIEQITIKAFIGSNNKTKQLEVDKIISTVNANHEAFTLDYPVIGYWRSEAEETAVLYLSDEQQKVMNTLNELKEVLDQEAIAYQIENDLQLI*
Ga0115191_10000336	F105376	AGAAG	MNEKPEVSAKEFGALEADVRHIKEGVDKHTITLERIENIAQANVTQSQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQTVRRK*

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