NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008518

3300008518: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764508039 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008518 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053241 | Ga0115191
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 764508039 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size116454710
Sequencing Scaffolds21
Novel Protein Genes25
Associated Families25

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2794
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 4732
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria subflava1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae4
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030786Metagenome184N
F040685Metagenome161N
F041827Metagenome159Y
F043990Metagenome155N
F045567Metagenome152N
F046433Metagenome151N
F047127Metagenome150N
F047508Metagenome149N
F051213Metagenome144N
F055792Metagenome138N
F057446Metagenome136N
F058221Metagenome135N
F061926Metagenome131N
F063777Metagenome129N
F064819Metagenome128N
F072446Metagenome121N
F073671Metagenome120N
F080164Metagenome115N
F097490Metagenome104N
F097527Metagenome104N
F098763Metagenome103N
F103430Metagenome101N
F103431Metagenome101N
F103432Metagenome101N
F105376Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0115191_100001All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279553250Open in IMG/M
Ga0115191_100003All Organisms → cellular organisms → Bacteria363715Open in IMG/M
Ga0115191_100004All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis320610Open in IMG/M
Ga0115191_100007All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473291432Open in IMG/M
Ga0115191_100035All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279170331Open in IMG/M
Ga0115191_100040All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279154198Open in IMG/M
Ga0115191_100042All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279143618Open in IMG/M
Ga0115191_100057All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria subflava132261Open in IMG/M
Ga0115191_100080All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473111177Open in IMG/M
Ga0115191_100217All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus51604Open in IMG/M
Ga0115191_100756All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae19957Open in IMG/M
Ga0115191_100842Not Available18532Open in IMG/M
Ga0115191_101328All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales13010Open in IMG/M
Ga0115191_102158All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae8828Open in IMG/M
Ga0115191_102394All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae8068Open in IMG/M
Ga0115191_103748All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium5464Open in IMG/M
Ga0115191_106541All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae3161Open in IMG/M
Ga0115191_108037All Organisms → cellular organisms → Bacteria2538Open in IMG/M
Ga0115191_110886All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1805Open in IMG/M
Ga0115191_113588All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1387Open in IMG/M
Ga0115191_118679All Organisms → cellular organisms → Bacteria → Terrabacteria group940Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0115191_100001Ga0115191_100001221F098763MDRRASLRVLSPALYLATKLFKAVVRTTISYDPSDEVEGKGGMNAIPTAVDE*
Ga0115191_100001Ga0115191_100001230F047508MLGHRLVEGCVKYPYLRCIGEYLRHSFDTEDVGRVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAARVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0115191_100003Ga0115191_10000333F103430MIEQITIKAFIGSNNKTKQLEVDKIISTVNANHEAFTLDYPVIGYWRSEAEETAVLYLSDEQQKVMNTLNELKEVLDQEAIAYQIENDLQLI*
Ga0115191_100003Ga0115191_10000336F105376MNEKPEVSAKEFGALEADVRHIKEGVDKHTITLERIENIAQANVTQSQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQTVRRK*
Ga0115191_100004Ga0115191_100004217F046433MSELSASLDVLDVLNPVTPPDLTLQAQDTSRNNPVTYVVDDGYMGTRTSDPRFRKMRCETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRHYLEVDNKPVYVDVGNSLGQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFIDDWIIGGDQVRERISVFGAYNNPGAHKVSVLVMAASSSYINNGIVADSLWGEVVYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGVLKGEKIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKGQYLQIY*
Ga0115191_100007Ga0115191_100007235F072446MKKLVFLLFGLCLYCFTACDSDHEPTKPVRPFHGDTLAQIAWNFRFIVEEHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTINRHKKELETVTRQLNALTLTTIGTSPVLCGVKSIKAVGVAENGRTYDLSWEIKLRIRDYSGRLKYPSGIVTLNCEDTESLTARYVVPLGQIRKDELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGEVLSFQHKLPNKSVLQELPNKSVLENYQQYGFLPESTYFTTLWPLPEKEDEREL*
Ga0115191_100035Ga0115191_10003551F055792VEIAGEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVIAEAMVTGALERDLAIDCTLEEVRPVLIDKGDDGAEAGTTWSRYPLETLQKEGYILFEGSMLPCEACGVDSRSSVKSLDLEPRIIGKAIEAVALPDMTCLDESIPLQGIGGLRDLLVTPDVSETDHLQTSREEGTNLLQLMGIIARKYQLFHTFVS*
Ga0115191_100040Ga0115191_10004011F051213MALTFVFTSCDWVGDEPTIEGNLNKYFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK*
Ga0115191_100042Ga0115191_10004247F045567MRQRDGRDTLTEELEGDITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIIQAERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPALGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEMPSLSSERGCVVERVVR*
Ga0115191_100057Ga0115191_10005756F103431MIDLDALIVRMLFFIQLFLQGIAWRVAIAHFLHAERGNATAAAFDGAFGENIADCHAEDDNDKNAESQKEGFHVCIPEG*
Ga0115191_100080Ga0115191_10008081F080164MVGLTLCAAPQVTLRERANAFPLITEKDESEIIAPYAWRLPVVPLSLDNREIFNFVKYPTLPSLFGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGMQKGGSRQAVDEQVTLHLPGFEKAEKPLLYKGQAGRLVLCEYYSSHRGDLLLDAANARPEIFGELRPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS*
Ga0115191_100080Ga0115191_10008082F103432MKLIHSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLQVEMVGKTLFRRHSLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTHDLGNYSYPLLQGKIKNVNYRTREGVFHEHYEAASVDTFSVKDDWLLNTKAEPSLYVPSFRLLVWDQPAEGCTKLRFTLTLVDGRSLVTEVPLY*
Ga0115191_100217Ga0115191_10021750F073671MEKEQAEHELAELHAQERSLEKALELVREKIRELINYTNKNKAAR*
Ga0115191_100756Ga0115191_10075612F040685MKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSQQAFDGQDEVIIIKTDKKTYRKMNASGNDHDREAWYNLLQIIAKEFGKKSIYE*
Ga0115191_100756Ga0115191_10075615F047127MKKTFAFILLIIISLAKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*
Ga0115191_100842Ga0115191_10084220F058221MRNKMGKIKNFQDLKNQKEELKAEIKEIESVLSFENPRKSFGVITSGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLEIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI*
Ga0115191_101328Ga0115191_10132812F030786MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAAKGGSATGAKKISLADITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINNQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0115191_102158Ga0115191_1021582F041827MKHFLSALALGCLLLSCNRDLENNENPAPQNEKLVLLKSASPGGIELNYKNRNEIESLSTDGMYGKSDINYEYDAYGRIIKERRFSHRYDYGETNITYQYDGQGRLTSSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGTDTCSAIPETGKEKTITLLVENGKVVKSLDENNQIIETIEYHNTKNALRNIKGFPALVVEFYIRPFTYELNWYNNIELVQDLRFIDNVKTRDLHNGNYIMYEYRTENYEITDKDYPYKVIALDKSSSDPTQQSLVYMNERNYEEQ*
Ga0115191_102394Ga0115191_1023941F097490FCKIILPLLCIISCSKRDEIEVYNMELDEEKKEVLVEIRNNTENNYYLLSPGVSIMAKTLYHIRGEMIEGQIHHKKIDSIVCSVCIWDDICTEQYYAMRDIVLLPKKSIKKIRYKYNEEEYRKIETVHIDFPYNGYSNEIGKKMHFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0115191_103748Ga0115191_1037484F064819MILKDSQGKDKIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLTRNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIAIFSKEISQELEKYK*
Ga0115191_106541Ga0115191_1065415F061926MIKTAKHIKTFLASMLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0115191_108037Ga0115191_1080372F063777MKILNIKISALPPENNSFWMKLLLYLCVPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEYLDDGYIFYKLTDEKSAIDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKIINGYNNNEQIEIAISE*
Ga0115191_110886Ga0115191_1108862F057446MNSISFGKTTITSYPEYFEITDNKKTSKLLYLSASLVFIAIYLFDLYQNDFDFGKVAHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEIVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0115191_113588Ga0115191_1135882F043990MIKKHGIIFTFGVIILGIVVYADHKIERSWTEGEFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNTTNGYYKYVVDENDDRSFDILIVDTTRKEICIYYQIL*
Ga0115191_118679Ga0115191_1186791F097527MIYFKMEKIGNSTHNKEKKTRSENLVFNTIPAAGGEPARPR
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