NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103649_100182

Scaffold Ga0103649_100182


Overview

Basic Information
Taxon OID3300008578 Open in IMG/M
Scaffold IDGa0103649_100182 Open in IMG/M
Source Dataset NameMicrobial communities of corn rhizosphere soil from Ohio, USA - Corn_Powermax_1a
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterAuburn University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)703
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Microbial Communities Of Corn And Soybean Rhizosphere Soil From Ohio, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046210Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0103649_1001821F046210N/ASSGINAEKGFRRTLFEPELVDPNLEINFVNDAEAALKSCNVNS*
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