NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_100657685

Scaffold Ga0066710_100657685


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_100657685 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1595
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000792Metagenome / Metatranscriptome890Y
F002887Metagenome / Metatranscriptome523Y
F022254Metagenome / Metatranscriptome215Y
F023076Metagenome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1006576851F022254GGAMTKTNPSKRVMRNRRTLPSRQRTYRQLYVRVDRLEDAISHFYKVINELRR
Ga0066710_1006576852F023076AGGGGGVTSRAEQYRRYARQCLEIAPAFRDEEARATLLGLAQAWLRLTHLALANRQIAELAVQVARQREIVKHGFDTGQRSEMAESLLHALEESLGAFEKHRIFLLSCQRVIQRPPLLSDAVTGRSLSGRNGRGAS
Ga0066710_1006576853F000792AGGMREHALLFCLLGLVLTATIILVIAPGAVTWALALIE
Ga0066710_1006576854F002887GAGGMAPKPARFVFAVGMALTILAAMTSAKVEPSPLIYPVYQPQLLLLY
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