NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_100949613

Scaffold Ga0066710_100949613


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_100949613 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1325
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005023Metagenome / Metatranscriptome414Y
F036632Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1009496131F036632N/AWHMSRDATLLIERGGAVALSADGRHQLHSQWLVWHHDPGARAKAGEAGKRLVREGRGAAERTTALVKKLVGGG
Ga0066710_1009496133F005023N/AGFTIYGDYSRPNSNAGGGTAFGGRVALGAGIFTLTGGVSSWDPDLVTQRLLSVGGTAAFRLIGGSLIPVAVNLQLGGGHSFEVTSSTTTLPLQTMLHAAVGLSVPLPTPVVSIEPFVSPGIRYHHYSNVAPGAPDHEVHFGWAIGGIVGVGPIGIHVAYDSEKFDDGTTHGVLGIGANLGLRP

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