Scaffold Ga0103707_10192206

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103707_10192206

Scaffold Ga0103707_10192206

Overview

Basic Information
Taxon OID	3300009025 Open in IMG/M
Scaffold ID	Ga0103707_10192206 Open in IMG/M
Source Dataset Name	Eukaryotic communities from seawater of the North Pacific Subtropical Gyre - HoeDylan_S2
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Woods Hole Oceanographic Institution
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	513
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Eukaryotic Communities From Seawater Of The North Pacific Subtropical Gyre

Source Dataset Sampling Location
Location Name	North Pacific Subtropical Gyre
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001240	Metagenome / Metatranscriptome	739	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103707_101922062	F001240	AGCAG	MHEKMTGKGFDKPAPPYNAYESVKDGAPDGKYERVIHTHFAGDGDDIFMRSMITTYAVEKENKDGSPTGVFMLTKSGAYAAAQEVLATHKGLHGAGLKSYLDTYFDKAWGHFDVMKTGSIEVQKAPQFMRFLASDQRMSLGESS

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