Scaffold Ga0099829

Basic Information
Taxon OID	3300009038 Open in IMG/M
Scaffold ID	Ga0099829_10000147 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34884
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (73.68%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

34884

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (73.68%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California, Eel River Critical Zone Observatory

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019038	Metagenome	232	Y
F020982	Metagenome / Metatranscriptome	221	N
F059736	Metagenome	133	Y
F064925	Metagenome / Metatranscriptome	128	Y
F073806	Metagenome / Metatranscriptome	120	Y
F089941	Metagenome / Metatranscriptome	108	Y
F093175	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099829_100001471	F019038	N/A	MRRLTVLMPFHTPFYAPLAAGVGLGHFRDEGLDVSTMPAASFGKGTIPALLDGDIEISLGGLMRSFELADRS
Ga0099829_1000014717	F059736	AGGAGG	VSAERLLVPIAIRCAALGGVVLLAAVPVYVFVEPPWRALVARLAVAFVLGVALLQLRGAVAARLARGGASPLEQALERPGSPPAVPLRFEELIDDVRATRRSRGHFERIMWPRLTALASRPLARPPARLGRGPSLADLRRVIADIERER*
Ga0099829_1000014721	F020982	AGGA	MARRHFMGSRIYKGLTYTLELEAVEESVFKAHARLSPSGPEVSIVDEASDSALKQAEAGIKHVIEQREAGAVVRERLPERMYGDVKYTIIVRTEATRVVAELYFIRSNAQPRRPGPGIFFALFEGKTKQGAIGQAERGLKAKLDKERASHRGGTLR*
Ga0099829_1000014722	F073806	N/A	MTYTTEEFVRHSLHRILRSVKYRNSFLCLPCLVTMTLESLHPGWRPSEITRAIDKVYAAPGVPMESRAAFRCAHCRNVKPCLGSPYL*
Ga0099829_1000014729	F064925	GGAG	MMGEELARCHAGALLRAHPGRYYCARCLTRVLDTAAWTKRDARRAIAVLFRWPIGLTTALRHRRDPCGDCGQVGGALLGAV*
Ga0099829_1000014730	F089941	AGG	MVTYTTEDFVRRAVGRVLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSVGPCARCKRPTPCLGEHPS*
Ga0099829_1000014733	F093175	GGAGG	MDGLRQIEVITQGDGWHLVGLDAEGRCWFGSPRRTTKGRMLTWILMDESVESEEPPPTITPEPLEEGLAGRPWPAAKPRS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0099829_10000147

Overview

Ecosystem & Geography

Associated Families

Sequences