NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102814_10252173

Scaffold Ga0102814_10252173


Overview

Basic Information
Taxon OID3300009079 Open in IMG/M
Scaffold IDGa0102814_10252173 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)960
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Henriciella → unclassified Henriciella → Henriciella sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2Long. (o)-123.94Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014373Metagenome / Metatranscriptome263N
F079927Metagenome115N
F105152Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0102814_102521731F079927N/ADEKYLTMYQYYKQLTDYERGEYDALHSYPFDESEESNKDYTEGYRTGYEYAQRMGAKDNE
Ga0102814_102521732F105152GGAGMSREYCRIDDDPSYDFSDYEDNTGYYTPYDDREVDYDPIDKVEMRERLKEVKQRRGITK*
Ga0102814_102521734F014373AGGAGMSRCKACEVILTEAELRKKDRVTDEYLDLCSMCHSASDEAIEENWSLAEETGIIRSNN*
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