Scaffold Ga0105247_10010711

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105247_10010711

Scaffold Ga0105247_10010711

Overview

Basic Information
Taxon OID	3300009101 Open in IMG/M
Scaffold ID	Ga0105247_10010711 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5536
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (45.45%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F070319	Metagenome / Metatranscriptome	123	Y
F093156	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105247_1001071111	F070319	N/A	MPIRNYLDGERFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLVSR
Ga0105247_100107116	F093156	AGGAGG	MHLRPDPDFEEFALDCIRLSNQEKSPILRRKLLTLAREWMHAAMHQQSAEIHRESTKPMDANSGEPWSEMDISDLSPSLDYGDTFAQTASFLCRDEDEVRQKAKELGLAERARKQSPAEAERSGPSMKG*

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