Scaffold Ga0114962_10002554

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114962_10002554

Scaffold Ga0114962_10002554

Overview

Basic Information
Taxon OID	3300009151 Open in IMG/M
Scaffold ID	Ga0114962_10002554 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	15107
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (73.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016273	Metagenome / Metatranscriptome	248	Y
F018369	Metagenome	235	Y
F046382	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000255420	F016273	N/A	MTQTEEAILISWRIQQWYEGMVLDARAMQDLQDAIEMLKTLAKQVQK*
Ga0114962_1000255424	F018369	AGG	MKYSYIQLTDEGKRQLMRELSRELTDKKIAELMDQFADGVKTDSNGEPYIKIDRDEVLVCAVPLYTHFIDINHIETVTANEEDYE*
Ga0114962_1000255425	F046382	AGAAG	MNKRNWPFLTDLGDPNWTGRTTRTMRNQTRYSADDERIPPVAWVVGLLMLAMVFGFFPLLSLVML*

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