NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114963_10012861

Scaffold Ga0114963_10012861


Overview

Basic Information
Taxon OID3300009154 Open in IMG/M
Scaffold IDGa0114963_10012861 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5657
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070923Metagenome122Y
F082075Metagenome113Y
F102439Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0114963_1001286110F082075N/AMPHVILRFRLPAEQTELNAAMQGREAKYVLYSVDQYCRSILKHGEPSEETRRHLEEIREMLRERPGLLDD*
Ga0114963_100128616F070923N/AMPGIVQVQKPARRVAHACFICSACGREVTVGDAPAGMLAHLRGRLRAEIGPQAVKAGRAFDEFVDAICRCWNSEHWTRLARSQPESQILAVMDAKVLIAKVQEDVEAMWGDSPELRTLYADVGRQAVEVFARLWFESMANRTWMRQACKEARRT*
Ga0114963_100128617F102439N/AMGEVQRSFVTDDDLPPAKGKRRRMPERLTPPMRKFLTKLARIGARVTWCIELLYDPSKGGQGELRDRAKAGDHTLVLDTVREVEYRASQLAEDIEAFMVPPDRLPSEPGKPARVEAMARRQAAKQHIFD*
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Institute for Fundamental Biomedical Research
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