NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10001285

Scaffold Ga0114968_10001285


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10001285 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19207
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (68.75%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004793Metagenome / Metatranscriptome423Y
F014841Metagenome / Metatranscriptome259Y
F043922Metagenome155Y
F054812Metagenome / Metatranscriptome139Y
F058789Metagenome / Metatranscriptome134N
F072277Metagenome121Y
F105048Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0114968_100012851F054812AGGMNEQEVNERFDNLVKPQVVKEKKEPAKFPELRYLWGVVLLGSFVLVVLSAVITTVIEAL*
Ga0114968_1000128513F072277N/AVESERRTDMKCVKCGVAVGKMEVFQGGVCLQCYAVEFEKEFQSALKIARLK*
Ga0114968_1000128519F105048N/AMILLSWLRGNKPLRVSEGSLRAIRRAQLDKTLAEEADKQRARKMARFSLISKPQ*
Ga0114968_1000128522F014841N/AMGSEEQKKPSAIDNALAEIGRVAFMEPAICTGWVLVSEWMGDGIKDYWTLTLADDQNPDWRHLGLVHHGLKYWEGNDDIGLRDK*
Ga0114968_1000128524F058789N/AMGSFASKAPCRDADPWLFDQFNLDLVQPALNYCSRCIFWEECDSLVKPKPSFYDGVVAGKVWRNGRIVAKLDASSPYRLIVGEENIEENYDALEIRGSELLGNRDELFLSREESDNRGEQKSKEDL*
Ga0114968_1000128532F043922N/AMNRREKQKAIQEAYSKWSEKVEFTSETGASNEDESKIMEEISTILQGNKPQ*
Ga0114968_100012856F004793AGGAGGMTIEEAKKIVGNQPTWALKNMVKALQMLPWRNTAEDLERLTAAKIVLKHRK*
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