NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0111538_10495092

Scaffold Ga0111538_10495092


Overview

Basic Information
Taxon OID3300009156 Open in IMG/M
Scaffold IDGa0111538_10495092 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1549
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001875Metagenome / Metatranscriptome623Y
F073745Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0111538_104950923F073745GAGGMSESMSDPMQRQLTSGRRSTPAALLPGAPRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGVCAVCAGLPPPGPAAPRAAVPGCLICVQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGASGRSEQERSDLL*
Ga0111538_104950924F001875AGGAGMTEQNQSRDLVATLRDALHQLEGALGRTRDGVDAIANQTERLRAGVEALGELRQREDTSVGIEMFVDAAVDLLEAFRALESGILDVQ
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