NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114977_10000196

Scaffold Ga0114977_10000196


Overview

Basic Information
Taxon OID3300009158 Open in IMG/M
Scaffold IDGa0114977_10000196 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39672
Total Scaffold Genes97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (68.04%)
Novel Protein Genes25 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)17 (68.00%)
Associated Families25

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000447Metagenome / Metatranscriptome1128Y
F000671Metagenome / Metatranscriptome945Y
F000852Metagenome / Metatranscriptome860Y
F001043Metagenome / Metatranscriptome794Y
F001280Metagenome / Metatranscriptome732Y
F004431Metagenome / Metatranscriptome438Y
F004840Metagenome / Metatranscriptome421Y
F005741Metagenome / Metatranscriptome391Y
F008357Metagenome / Metatranscriptome334Y
F011394Metagenome / Metatranscriptome291Y
F017133Metagenome / Metatranscriptome242Y
F017134Metagenome / Metatranscriptome242Y
F017995Metagenome / Metatranscriptome237Y
F019325Metagenome / Metatranscriptome230Y
F020166Metagenome / Metatranscriptome225Y
F021988Metagenome / Metatranscriptome216Y
F038241Metagenome / Metatranscriptome166Y
F042904Metagenome / Metatranscriptome157Y
F047059Metagenome / Metatranscriptome150Y
F053291Metagenome / Metatranscriptome141N
F060917Metagenome / Metatranscriptome132Y
F066776Metagenome / Metatranscriptome126Y
F074872Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0114977_1000019622F019325AGGAGMTQLTETIYSTIVHEFHNGGVKSSYGLDAYTRKALLRDLLSSKACYCINCISKEVK*
Ga0114977_1000019623F017133AGGAGGMTNSIFGQGFAKVSDYPKGLMNLCPCGQVVLAPANYHAGFPWWENPNKCKEMWDNSHSA*
Ga0114977_1000019625F004431GGAGMTITYSLWDGAQFLGFFTATSADEMLKVVEDLQKVSKNVVAHLRKVEQN*
Ga0114977_1000019630F000447AGGMGYIEFARINEEGVSWVDLSEATPDELFNIEIGLLNEGAFE*
Ga0114977_1000019631F017995AGGMSKMKEYIEIIAANCDECGGAGFVFFGDENNYDVEPCDCIAEISDELTVDWVNE*
Ga0114977_1000019632F004840N/AMYKITIAYDSNTPHWTKPYNDEMEAWKDFFSFTDWGFANEFSTVNIYTPAGKCYTKVFYREGRKVVTK*
Ga0114977_1000019634F017134GGAGMELFHVACLNYEICGAEETFGSIEEYEIYGDDYICAECYDSEEMEFYELTGWADSDALASAGHGMDEDY*
Ga0114977_1000019639F074872AGGMSDPNAIILTYKKGSKMTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNASGSVRVLLEMPTKETRWTTVSDSALTGA*
Ga0114977_1000019641F005741AGGMANRFRIEIYDANKLNDVTIYSEQGIDKEYLTELVFSNIKNFNGKVSAYVYDSLKKKKTTAMFLNEDTVAFAKSKSPALTK*
Ga0114977_1000019646F001043AGGAGMSDYKDGFQDGYKFAREEIMEKLSEIDIADIDSWILDRLSEMIEGNQL*
Ga0114977_1000019651F053291GAGMITTQELIDYMYDDNLTHFDDRDTSDDCDCYIHITLNTMIKYMEAIEC*
Ga0114977_1000019652F038241GGAGGMLGYTKTDLDEMGNACHDAKLFYIMKSDVTHVDQDPLVEGLLKAQDFLEGLWAEGYFD*
Ga0114977_1000019653F047059N/AMKIHLISLNQDLEDARNNVALNEDEYFESDNFYMGAIDATEHLLSVATDIMNSTNERV*
Ga0114977_1000019654F000263AGGMNAEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLADAIEREEETEEAMDSMVRTECEGHLDALVALYELTYQLSFAIGARTL*
Ga0114977_1000019656F000441AGGAGGMKMSDRYVNDQLNTAQKLLWGGSETENIEAHNIIAKLIKDREDLIENS*
Ga0114977_1000019657F000852N/AMTSLERRFKMATKREYLKSQGITVGVRGRFSGAAKVALAEAAAKGITFTAEVPAGKAK*
Ga0114977_100001966F008357AGGAGMAGQKNFEVDQNATFSFIVEYKDNNGNAIDLTGASAKMQIRDTKGGAKLAVTLTSPSGGIVLDAPNGKLTIKMTPTQTNKLFYPKSSYDIMVIDSNANKIKLLEGFMTLNRSVTI*
Ga0114977_1000019664F060917N/AMETNNMIDWLVNKIFRFTSLREAIFEEVHMYDHLKGIMRDPEAMQTASLSWCEGDTWYGWTYNDKLNRYYFDDIGNNSLMGLWEDEWLRKAEMVE*
Ga0114977_1000019666F020166N/AMKEPKIMKMDWRSLGYWPVYKDGKLTWEKDPKDD*
Ga0114977_1000019676F021988N/AMSNFQKDDGTGTTPPPNGGAAGSVTSREATRKNPKQGMVVDRNKHGIRRETSLIPKAPKKTGRKKI*
Ga0114977_1000019677F001280N/AMCIECGCEAFGSSTGVIPVEVTDVSRDGEAGLTLSMTSTPEQTRQFINE*
Ga0114977_1000019685F042904GAGGMADLTVMDEIIGEVAEGLYKKWSSALPEDEKNQQAFSAMSKNAHETTLFVIQEFMNKFNAAAEELKDQ*
Ga0114977_1000019691F000671AGGAMEKVLCYCCNKTKNKLIARKSSLLSINLLMCETCIVSKFEPRWVVILSGRQFGPETVREYVIKKRYCGNEISASELLV*
Ga0114977_1000019693F011394N/AMFIDKNKNHFEHGINQWTGEPIKPVFYTKEMAKKVREIKSPAADLRLDMVKYPEFIAIRLYEDNFSKYDGSMKLRVIEYVEMVKKIVESYGVRCELEGVPSGRKT*
Ga0114977_1000019695F066776GAGMLHLTEKGVEIFIKKSQTPKQESFWNNYDLVIWKKDNGGYSDIKGMFRKNAWGKTEKISVNKNGIWMLPKRYVKYFK*
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