NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114978_10007155

Scaffold Ga0114978_10007155


Overview

Basic Information
Taxon OID3300009159 Open in IMG/M
Scaffold IDGa0114978_10007155 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8815
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005502Metagenome / Metatranscriptome398N
F007747Metagenome / Metatranscriptome345Y
F016963Metagenome243N
F020510Metagenome / Metatranscriptome223Y
F043284Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0114978_1000715510F005502AGGMRALCNVVLTFLAFFGFPATQASNVMIDMRPDAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTKLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVIDVFAASEKQFNAMRLPKVAMVEVSK*
Ga0114978_1000715513F020510AGGTGGMTLAQVLLMFSARVIGTYTPEQYAEQVIIARNNRMRWGMGQW*
Ga0114978_1000715516F007747GGAGGMKDLGKITFGKARLAPKQVLVDVSYDAKTAKALHAFGLKQLKKDEEAVIQYVIAKALEGFSKK*
Ga0114978_1000715520F043284AGGMKLLSVINKLNETRDKAIELVGRTISLASDAGEIIAAARTEGKDVQAICEEAGITEEVGKRYEKVAATQKRLSSGDADPSLMRQTYLRIGILPDPITMSEPSEPKHFLFPIMKARQWLASRGAKFIAQDKALKEQFLAEAEPIVKAYNDLRGAA*
Ga0114978_100071559F016963GAGGVIEVLAEQSTHEQLLNRVRSLARELAEAKAALAAAEGRENDLIDRIRAGL*
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Institute for Fundamental Biomedical Research
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